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Arx Tools

rename_genbank

rename_genbank¶

Change locus tags of GenBank files (tested with prokka and PGAP files).

Usage¶

rename_genbank \
  --file /path/to/input.gbk \
  --out /path/to/output.gbk \
  --new_locus_tag_prefix STRAIN.2 \
  --old_locus_tag_prefix STRAIN.1

Parameters¶

--file: Path to the input GenBank file
--out: Path to the output GenBank file
--new_locus_tag_prefix: New prefix for locus tags (required)
--old_locus_tag_prefix: Old prefix for locus tags (optional)

Help¶

rename_genbank --help