Tools Overview¶
This section contains documentation for all Arx Tools scripts.
Helper Scripts¶
File Renaming¶
- rename_fasta - Rename locus tags in FASTA files
- rename_genbank - Rename locus tags in GenBank files
- rename_gff - Rename locus tags in GFF files
- rename_eggnog - Rename locus tags in eggNOG annotation files
- rename_custom_annotations - Rename locus tags in custom annotation files
File Conversion & Utilities¶
- reindex_assembly - Reindex assembly FASTA files
- genbank_to_fasta - Convert GenBank to FASTA format
Orthology Analysis¶
- init_orthofinder - Prepare OrthoFinder analysis
- import_orthofinder - Import OrthoFinder results