rename_fasta

Change locus tags of protein or nucleotide FASTA files.

Usage

rename_fasta \
  --file /path/to/input.file \
  --out /path/to/output.file \
  --new_locus_tag_prefix STRAIN.2 \
  --old_locus_tag_prefix STRAIN.1

Parameters

• --file: Path to the input FASTA file
• --out: Path to the output FASTA file
• --new_locus_tag_prefix: New prefix for locus tags (required)
• --old_locus_tag_prefix: Old prefix for locus tags (optional)

Help

rename_fasta --help