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Arx Tools

A set of scripts that helps to import genome data into the Arx folder structure.

Overview

Arx Tools provides a comprehensive suite of utilities for managing genome data within the Arx folder structure. Whether you're working with local genome assemblies, downloading from NCBI, or performing orthology analysis, these tools streamline the process of organizing and importing genomic data.

Key Features

  • Folder Structure Management: Create and maintain standardized Arx folder structures
  • Genome Import: Import genome data with automatic metadata generation
  • NCBI Integration: Download and process genomes directly from NCBI
  • File Renaming: Batch rename locus tags across multiple file formats
  • Orthology Analysis: Prepare and import OrthoFinder results
  • Assembly Management: Reindex and convert assembly files