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Version 2024-12

Added

  • FASTA & GenBank File Upload: Upload and analyze sequences in the dotplot tool.
  • LicenseGuard Verification: Middleware to validate licenses with limits and feedback.
  • Phylogenetic Analysis: Integrated RAxML-NG and IQ-TREE for tree generation.
  • Download Options: Export GenBank, FASTA, GFF, and SVG files directly.
  • User Preferences: Genome comparison settings now saved via cookies.
  • Improved Logging: More detailed logs for debugging, error tracking, and system performance monitoring.

Fixed

  • Dotplot Display: Bug where it wouldn’t render correctly.
  • Annotation Search: Matrix generation now works in all cases.
  • Django Startup Warnings: Eliminated unnecessary runtime warnings.

Changed

  • Updated dependencies (pandas, numpy, matplotlib, etc.).
  • Some submodules are now managed as Poetry dependencies.
  • Removed unnecessary links from the home page.

Security

  • Upgraded security-related dependencies.