Introduction

Demo instance: demo.abrinca.com
Installation: how to install
Helper package: github.com/opengenomebrowser/opengenomebrowser-tools

Abstract

OpenGenomeBrowser is a self-hostable platform that manages access to genomic data and drastically simplifies comparative genomics analyses. It enables users to interactively generate phylogenetic trees, compare gene loci, browse biochemical pathways, perform gene trait matching, create dot plots, execute BLAST searches, and access the data. It features a flexible user management system, and its modular folder structure enables the organization of genomic data and metadata, and to automate analyses.

Need Assistance?

If you have questions or encounter an issue, please reach out to us via our support page on abrinca.com.

How to cite

Please cite our paper on BMC Genomics:

Roder, T., Oberhänsli, S., Shani, N. et al. OpenGenomeBrowser: a versatile, dataset-independent and scalable web platform for genome data management and comparative genomics. BMC Genomics 23, 855 (2022). https://doi.org/10.1186/s12864-022-09086-3

Click here to see the bibtex code.

@article{roder_2022,
  title = {{ '{{' }}OpenGenomeBrowser}: a versatile, dataset-independent and scalable web platform for genome data management and comparative genomics.},
  author = {Thomas Roder and Simone Oberhänsli and Noam Shani and Rémy Bruggmann},
  pages = {855},
  url = {http://dx.doi.org/10.1186/s12864-022-09086-3},
  year = {2022},
  month = {dec},
  day = {27},
  urldate = {2023-01-05},
  journal = {{ '{{' }}BMC} Genomics},
  volume = {23},
  number = {1},
  doi = {10.1186/s12864-022-09086-3},
  pmid = {36575383},
  pmcid = {PMC9795662}
}